Shaun does not require the rest of the Institute to adhere to his personal beliefs. Ultimately, Shaun wishes to take humanity further underground and away from the radiation, mutant, and danger-infested surface world.
His feelings about the Institute as the future and last hope of humanity are based upon the beliefs he was instilled under their control he possesses a fear of the surface, having never visited it himself since he was an infant, and he is concerned of the potential threats of the Commonwealth to the Institute. After his promotion, he learned the truth that one of his parents was still alive. In time, he became the acting director of the Institute.
Shaun was then raised by the Institute as one of their own, later nicknamed "Father" for his role in providing the DNA required to complete the third generation synths. Kellogg then returned the other parent to cryogenic suspension and terminated the life support of the other frozen Vault participants. The parent holding Shaun was unwilling to part with their son and resisted Kellogg and was shot and killed.
Along with two Institute technicians, Kellogg revived Shaun and his parents. Sometime in 2227, the Institute dispatched their mercenary, Conrad Kellogg, to Vault 111 to retrieve Shaun. The infant, Shaun, represented the perfect source of uncorrupted DNA, and the Institute set about to acquire him. At this time, the Institute was desperate for genetic material unaffected by the radiation-ravaged wasteland for their Third Generation Synth project. The cryogenically preserved Vault participants remained undisturbed for around 150 years until the Institute discovered records regarding Vault 111. Approximately six months following their internment, a revolt occurred and the staff abandoned Vault 111, leaving behind those frozen within, completely unaware of what had occurred. Unaware of the true purpose of the Vault, Shaun and his parents became frozen in cryogenic suspension. On October 23, during the outbreak of the Great War, his parents took him and fled to nearby Vault 111 as the atomic bombs began to fall on the Commonwealth. Shaun was less than a year old by October 2077.
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